基因数据处理52之cs-bwamem集群版运行(1千万条100bp的reads)
发布时间:2021-03-12 01:03:56 所属栏目:大数据 来源:网络整理
导读:副标题#e# 1.art生成模拟序列: art_illumina -ss HS20 -i GRCH38BWAindex/GRCH38chr1L3556522.fna -l 100 -c 10000000 -o g38L100c10000000Nhs20 2.上传到hdfs,制定partition数 spark-submit --class cs.ucla.edu.bwaspark.BWAMEMSpark --master spark://
(2)合并前后数据展示: hadoop@Master:~$ hadoop fs -du -h /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam 9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/0 9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/1 9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/10 9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/100 9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/101 9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/102 9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/103 9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/104 10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/105 9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/106 10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/107 9.6 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/108 9.9 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